First International BioInfo'2005 Workshop

Plovdiv, Bulgaria, 20th September 2005

 

Participants


 

Professor Nikola Kasabov is the Founding Director and the Chief Scientist of the Knowledge Engineering and Discovery Research Institute KEDRI, Auckland (http://www.kedri.info/). He holds a Chair of Knowledge Engineering at the School of Computer and Information Sciences at Auckland University of Technology. He is a Fellow of the Royal Society of New Zealand, Fellow of the New Zealand Computer Society, Senior Member of IEEE, member of the TC12 of IFIP. He holds MSc and PhD from the Technical University of Sofia, Bulgaria. His main research interests are in the areas of: intelligent information systems, soft computing, neuro-computing, bioinformatics, brain study, speech and image processing, novel methods for data mining and knowledge discovery. He has published more than 300 publications that include 15 books, 80 journal papers, 50 book chapters, 25 patents and numerous conference papers. He has extensive academic experience at various academic and research organisations: University of Otago, New Zealand; University of Trento, Italy; University of Essex, UK; Technical University of Sofia, Bulgaria; University of California at Berkeley; RIKEN Brain Science Institute, Tokyo; University of Keiserlautern, Germany , and others. He is one of the founding board members of the Asia Pacific Neural Network Assembly (APNNA) and was its President in 1997/98. Kasabov is on the editorial boards of 7 international journals and has been on the Program Committees of more than 50 international conferences in the last 10 years. He chaired the series of ANNES conferences (1993-2001). Kasabov is a co-founder of Pacific Edge Biotechnology Ltd (http://www.peblnz.com/).

More information of Prof. Kasabov can be found on the web site: http://www.kedri.info/. He can be contacted on: nkasabov@aut.ac.nz


 

Professor Doctor of Technical Sciences Stoicho D. Stoichev teachs Synthesis and analysis of algorithms, Combinatorial algorithms and Algorithms in bioinformatics to Bachelor and Master of Science students in Computer Systems and Technologies, Dept. of Computer Systems, Technical University of Sofia (http://www.tu-sofia.bg/) and its branch in Plovdiv. He can be emailed at: stoi@tu-sofia.bg. More information of prof. Stoichev can be found on the Web site:http://www.tu-sofia.bg/Bul/faculties/fksu/freepage/stoichev. He is a Senior Member of IEEE (former chair of Computer Society chapter at Bulgaria IEEE Section) and a member of Academy International of Sciences in San Marino, Member of Scientific Council of Electronics and Computer Science; Member of Advisory Board of High Performance Computing and Networking Conferences (Europe); He participated with talks in national and international conferences, workshops and seminars: First Pitagorian Conference (Greece), International Conference and Exhibition on High Performance Computing and Networking (Member of Advisory Board, 1994-96, Munich, Milano, Brussels), International Conference on Digital Signal Processing DSP95 (Cyprus), delegate of IEEE Section Congress(Minneapolis, USA,1999), lecture on seminar in MTU (USA, 1999), lectures in University of Vaxjo (Sweden) etc. He has published more than 140 publications that include 14 textbooks. His research interests are in: algorithms and software for determining graph isomorphisms and automorphisms (generators, orbits and order of graph automorphism group); algorithms and software for solution of subgraph problem and maximum common subgraph problem; algorithms and software for determining unital designs and maximal arcs in projective planes; algorithms and software for problems in bioinformatics, algorithms and software for determining hamiltonian paths and circuits of graphs; algorithms and software for automatic generation of algorithms for problems in some fields of mathematics and computer science (Artificial Intelligence); algorithms and software for syntactic analysis of sentences in Bulgarian language (Artificial Intelligence); algorithms and software for modeling and analysis of electrical and electronic circuits. Some of the Software developed by S. D. Stoichev: Programs for determining generators, orbits and order of the graph automorphism group and graph isomorphism (new efficient exact and approximate algorithms); Programs for determining subgraph and maximum common subgraph (new efficient exact and approximate algorithms); Programs for determining unitals in projective planes, etc.


 

Dr. Elena Tsiporkova is currently a Senior Scientist in the Computational Biology Division of the Department of Plant Systems Biology - Flanders Institute for Biotechnology / University of Ghent. She has held the position since September 2003 after almost 5 years of research experience in the speech recognition industry and more than 10 years of academic research experience in the Technical University of Plovdiv Bulgaria, the University of Ghent, Belgium and the University of Bristol, England. She holds an MSc degree in Mathematics and Computer Science from the University of Plovdiv, Bulgaria and a PhD degree in Mathematics from the University of Ghent, Belgium.

Her scientific interests and working experience vary from purely theoretical research to applied, product driven, technological R&D. Her main research expertise is in Uncertainty Modelling (Fuzzy Systems, Dempster-Shafer Theory, Modal Logic) and Speech Recognition (Hidden Markov Models, Dynamic Programming and Confidence Measures). She has 39 publications in refereed journals and conference proceedings.

She can be contacted on: elena_tsiporkova@hotmail.com

 


 

Dr. Veselka Boeva is an Associate Professor in Computer Science at the Department of Computer Systems of the Technical University of Plovdiv, Bulgaria. She has been working there since 1990. Boeva holds an MSc degree in Mathematics and Computer Science from the University of Plovdiv, Bulgaria and a PhD degree in Computer Science from the Technical University of Plovdiv, Bulgaria. She has visited on different research fellowships the Slovak Technical University, Slovakia, the Stockholm University and KTH, Sweden and the Universities of Ghent and Mons, Belgium. Currently, she is co-chair of the Bioinformatics Special Interest Group based at the Technical University of Plovdiv.

Her research activities are centered around Dempster-Shafer theory and modelling uncertainty with Kripke's semantics. She is currently performing research in decision making, formal methods in software systems and aggregation operators. She has 30 publications in refereed journals and conference proceedings.

She can be contacted on: vboeva@tu-plovdiv.bg

 


 

Assoc. Prof. Kiril Ivanov Tenekedjiev, DSc has majored in Ship Machines and Equipment from the Technical University Varna in 1986. His PhD thesis, defended in 1994 is in the field of statistical pattern recognition and technical diagnostics. His scientific interests cover pattern recognition, statistics, mathematics, programming, simulation modeling, mathematical modeling of biological systems, epidemiological modeling, utility theory, and subjective statistics. Quantitative decision analysis is the field of his DSc thesis, defended in 2005. Assoc. Prof. Kiril Tenekedjiev is member of a number of academic societies and organizations, among which the European Association for Decision Making, Bulgarian Union of Automation and Informatics, Union of the Mathematicians in Bulgaria, Bulgarian Association of Pattern Recognition, etc. He has been guest lecturer and visiting scientist in many education institutions, like Tokyo Institute of Technology, Joint Research Center of the European Union (IPSC, Italy), Semmelweis University, Budapest, Hungary, Aristotle University of Thessaloniki and University of Piraeus, Greece, University of Rostock, Germany, Loughborough University and University of Reading, United Kingdom, etc. His research in mathematical modeling of biological systems was presented in several publications in peer reviewed medical journals, like The Journal of Biological Chemistry, Blood, Pathophysiology of Haemostasis and Thrombosis, Annales Historico-Naturales Musei Nationalis Hungarici, Biochemistry and Molecular Biology Education.


 

Krasimir Kolev, MD, PhD is an adjunct professor at the Semmelweis University, Budapest, Hungary, Department of Medical Biochemistry. He has obtained his MD from the Semmelweis University in 1988. The PhD degree in medical sciences from the Hungarian Academy of Sciences, was received on the basis of a thesis in regulation of the fibrinolytic activity of plasmin, miniplasmin and neutrophil leukocyte proteases, defended in 1996. The main fields of research of Krasimir Kolev are enzymology, thrombolysis, and pathomechanism of cardiovascular and cerebrovascular diseases. He is a member of the Hungarian Society for Thrombosis and Haemostasis, and of the American Society for Biochemistry and Molecular Biology. Among his publications are 28 original papers with a total impact factor of 95, 30 congress presentaitons, and 3 books. He holds several academc awards, among which are the Semmelweis University award for excellence, the Sanofi-Aventis award for atherothrombosis research, and the Huzella Tivadar research award.


 

Balazs Varadi is a PhD fellow and research assistant at the Semmelweis University, Faculty of Medical Biochemistry, Budapest, Hungary. He is with the Haemostasis workgroup of Prof. Raymund Machovich. He holds a MA degree in Pharmacy from the Semmelweis University, Faculty of Pharmacy, obtained in 2001.

He has several publications in the fields of enzymology and thrombolysis, in peer review international medical journals, like the Journal of Biological Chemistry, Blood, etc.

 

 

 

   


 

Dr. Albena Taneva is a PhD fellow and research assistant in Control Systems Department at the Electronic and Automation Faculty of the Technical University of Plovdiv, Bulgaria. Taneva holds an MSc degree in Automation from the University of Plovdiv, Bulgaria, 1998 and a PhD degree in Automation from the Technical University of Plovdiv, Bulgaria, 2005. She has been on research fellowships in FESB, University of Split, Croatia, in Department of Control Engineering, in Automation Department, FERI, and University of Maribor, Slovenia.

Her research interests are focused on algorithms for process control, hybrid models and systems, optimization methods and real applications in Industrial Automation. She has 15 publications in the fields of intelligent control systems. She can be contacted on: altaneva@tu-plovdiv.bg